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Oct 12, 20048 min
In the first episode of season 3, the Reds and Blues find themselves scattered across the universe as they attempt to hunt down evil mastermind O'Malley.

Oct 24, 20047 min
Sarge and Caboose try to escape from a bizarre battle between two groups of unknown Red and Blue soldiers.

Nov 8, 20046 min
O'Malley sets his evil plans in motion, while the Reds and Blues debate their next move.

Nov 9, 20046 min
Church and Grif get used to life on the inside, while Simmons and Donut attempt to reprogram the teleporters.

Nov 10, 200410 min
The Reds and Blues must work together to stop O'Malley and disable the ten megaton bomb inside Church's body.

Nov 21, 20043 min
Grif and Simmons try to make sense of their new futuristic surroundings, while Caboose helps Donut with an important discovery.

Dec 6, 20045 min
Sarge and Donut attempt to fix the Warthog while O'Malley and Lopez inspect their new home.

Dec 16, 20044 min
(Episode 45.9) Available only to sponsors or on the Season 3 DVD and produced solely by Gustavo Sorola while the rest of the production crew had been out of town. This episode continues or replaces the events of episode 45, though is non-canon, and features paper cutouts as characters while portraying Simmons as a hero.

Dec 17, 20046 min
O'Malley and Lopez receive an unexpected visitor, and the Reds intercept a transmission from an old adversary.

Jan 17, 20055 min
The Reds and Blues meet up with Tex and plot ways to infiltrate O'Malley's compound.

Jan 23, 20056 min
Sarge and Tex lead an offensive against O’Malley, with Caboose doing some heavy lifting.

Feb 14, 20057 min
Church seeks help from an ancient computer, while the Reds search for the missing head of Lopez.

Mar 1, 200516 min
The computer completes the teleporter and reveals its name to be Gary. Church teleports back to Blood Gulch shortly before the series begins. Another Church runs in and tells Gary to teleport him to Sidewinder instead, because he "screwed everything up." On Blood Gulch Church finds that he either has no effect, or causes the previous events by his presence.

Mar 15, 20058 min
Church discovers the event of the past are hard to change, and even harder to believe.

Mar 22, 200510 min
Church’s travels through time lead him into an unexpected temporal loop of confusion.

Mar 28, 20054 min
Tucker shows off his new bling while the Reds monkey about.

Apr 11, 20055 min
The Reds debate the source of an incoming distress signal while Caboose introduces everyone to his new friend.

May 2, 20055 min
Church tries to placate Andy, and Grif gets the wrong idea.

May 9, 20055 min
O’Malley and Lopez begin their attack… their very, very slow attack.

May 18, 20058 min
Church tries to figure out the prophecy of the “Great Destroyer” as O’Malley’s Robot Army inches closer.